Feat: Add Kubernetes manifests for k3s production deployment

Adds complete k8s/ manifest tree: Namespace, VaultAuth + VaultStaticSecret
CRDs (VSO secret sync from Vault KV v2), API and UI Deployments and Services,
nginx Ingress with cert-manager TLS, MinIO StatefulSet with PVC and init Job,
and Alembic init container on the API Deployment for automatic schema
migrations. Includes .yamllint.yml config and validate-k8s Makefile target.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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# Tasks: Kubernetes Production Manifests
**Input**: Design documents from `specs/013-k8s-manifests/`
**Prerequisites**: plan.md ✅, spec.md ✅, research.md ✅, contracts/operator-deploy.md ✅, quickstart.md ✅
**Tests**: K8s manifests have no unit test framework. Validation is via `yamllint` (format) and `kubectl apply --dry-run=client` (schema). Each phase ends with a validation step. The TDD analogue is: write the validate-k8s Makefile target (Phase 1) before any manifest exists, so it immediately fails — then manifests are written to make it pass.
**Organization**: Phase 1 creates the directory structure and validation target. Phase 2 creates the namespace and Vault CRDs (foundational — required by all user story deployments). Phases 36 implement user stories. Phase 7 polishes.
## Format: `[ID] [P?] [Story] Description`
- **[P]**: Can run in parallel with other [P] tasks in the same phase
- **[Story]**: Which user story this task belongs to
- Exact file paths included in every task description
---
## Phase 1: Setup
**Goal**: Create the `k8s/` directory structure and the validation Makefile target before any manifests exist.
- [X] T001 Create the `k8s/` directory tree: `mkdir -p k8s/api k8s/ui k8s/minio k8s/vault` from the repository root; confirm the four subdirectories exist
- [X] T002 Add a `validate-k8s` target to `Makefile` immediately after the existing `verify-ui-prod` target: the target MUST run `yamllint -d relaxed k8s/` then `kubectl apply --dry-run=client -f k8s/`; add `validate-k8s` to the `.PHONY` line; note in a comment that `kubectl apply --dry-run=client` requires a kubeconfig with cluster access — offline validation uses `yamllint` only
---
## Phase 2: Foundational (Namespace + Vault CRDs)
**Goal**: Namespace and Vault secret-sync resources that every other manifest depends on.
**⚠️ CRITICAL**: No user story manifest can be applied until this phase is complete — the namespace must exist before any namespaced resource, and the Vault CRDs must exist before the API or MinIO pods can start.
- [X] T003 Create `k8s/namespace.yaml`: a single `Namespace` resource with `name: reactbin` and no additional labels
- [X] T004 [P] Create `k8s/vault/vault-auth.yaml`: a `VaultAuth` resource (`apiVersion: secrets.hashicorp.com/v1beta1`) with `name: reactbin-auth`, `namespace: reactbin`, `spec.method: kubernetes`, `spec.mount: kubernetes`, `spec.kubernetes.role: reactbin`, `spec.kubernetes.serviceAccount: default`, `spec.kubernetes.audiences: [https://kubernetes.default.svc]`; add a comment noting the operator must create the Vault role and bind it to the `default` SA in the `reactbin` namespace with read access to both secret paths
- [X] T005 [P] Create `k8s/vault/api-secret.yaml`: a `VaultStaticSecret` resource with `name: api-secret`, `namespace: reactbin`, `spec.vaultAuthRef: reactbin-auth`, `spec.mount: secret`, `spec.type: kv-v2`, `spec.path: reactbin/api/config`, `spec.refreshAfter: 1h`, `spec.destination.name: api-env`, `spec.destination.create: true`; add a comment listing all required Vault keys: `DATABASE_URL`, `JWT_SECRET_KEY`, `OWNER_USERNAME`, `OWNER_PASSWORD`, `S3_ENDPOINT_URL`, `S3_BUCKET_NAME`, `S3_ACCESS_KEY_ID`, `S3_SECRET_ACCESS_KEY`, `API_BASE_URL`
- [X] T006 [P] Create `k8s/vault/minio-secret.yaml`: same structure as T005 but `name: minio-secret`, `spec.path: reactbin/minio/credentials`, `spec.destination.name: minio-credentials`; comment listing required Vault keys: `MINIO_ROOT_USER`, `MINIO_ROOT_PASSWORD`
**Checkpoint**: Foundational resources complete. User story implementation can now begin.
---
## Phase 3: User Story 1 — Application Reachable in Production (Priority: P1) 🎯 MVP
**Goal**: API and UI are deployed and reachable at the production domain via HTTPS with TLS from cert-manager.
**Independent Test**: Apply all Phase 2 + Phase 3 manifests. Confirm `kubectl get pods -n reactbin` shows api and ui pods Running. Confirm `curl https://<domain>/api/v1/health` returns 200 and `curl https://<domain>/` returns 200.
- [X] T007 [P] [US1] Create `k8s/api/service.yaml`: `Service`, `name: api`, `namespace: reactbin`, `type: ClusterIP`, `selector: {app: api}`, `ports: [{port: 8000, targetPort: 8000, name: http}]`
- [X] T008 [P] [US1] Create `k8s/ui/service.yaml`: `Service`, `name: ui`, `namespace: reactbin`, `type: ClusterIP`, `selector: {app: ui}`, `ports: [{port: 8080, targetPort: 8080, name: http}]`
- [X] T009 [P] [US1] Create `k8s/ui/deployment.yaml`: `Deployment`, `name: ui`, `namespace: reactbin`, 1 replica, `selector.matchLabels: {app: ui}`; container `name: ui`, `image: reactbin-ui:latest` (placeholder — operator substitutes real tag), `ports: [{containerPort: 8080}]`; `livenessProbe: {httpGet: {path: /, port: 8080}, initialDelaySeconds: 10, periodSeconds: 30}`; `securityContext: {runAsNonRoot: true, runAsUser: 101}` (UID 101 is the nginxinc/nginx-unprivileged user); add comment: `# Replace 'latest' with the real image tag before applying`
- [X] T010 [US1] Create `k8s/api/deployment.yaml`: `Deployment`, `name: api`, `namespace: reactbin`, 1 replica, `selector.matchLabels: {app: api}`; container `name: api`, `image: reactbin-api:latest` (placeholder), `ports: [{containerPort: 8000}]`; `envFrom: [{secretRef: {name: api-env}}]`; `env: [{name: API_DOCS_ENABLED, value: "false"}]`; `livenessProbe: {httpGet: {path: /api/v1/health, port: 8000}, initialDelaySeconds: 10, periodSeconds: 30}`; `readinessProbe: {httpGet: {path: /api/v1/health, port: 8000}, initialDelaySeconds: 5, periodSeconds: 10}`; `securityContext: {runAsNonRoot: true, runAsUser: 1001}`; add comment: `# initContainers block added in US3 (T015)`; add comment: `# Replace 'latest' with the real image tag before applying`
- [X] T011 [US1] Create `k8s/ingress.yaml`: `Ingress`, `name: reactbin`, `namespace: reactbin`; `annotations: {"cert-manager.io/cluster-issuer": "letsencrypt-prod", "nginx.ingress.kubernetes.io/ssl-redirect": "true"}`; `spec.ingressClassName: nginx`; `spec.tls: [{hosts: ["<your-domain>"], secretName: reactbin-tls}]`; `spec.rules: [{host: "<your-domain>", http: {paths: [{path: /api/, pathType: Prefix, backend: {service: {name: api, port: {number: 8000}}}}, {path: /, pathType: Prefix, backend: {service: {name: ui, port: {number: 8080}}}}]}}]`; IMPORTANT — `/api/` path entry MUST appear before `/` in the YAML (nginx evaluates in declaration order); add comment: `# Replace <your-domain> with the real domain before applying`
- [X] T012 [US1] Verify US1: run `yamllint -d relaxed k8s/` from the repository root and confirm no errors; run `kubectl apply --dry-run=client -f k8s/` (requires cluster kubeconfig) and confirm all resources in namespace.yaml, vault/, api/, ui/, and ingress.yaml are accepted; if no cluster is available, yamllint passing is sufficient for this checkpoint
**Checkpoint**: US1 complete. API and UI manifests are schema-valid and ready to apply.
---
## Phase 4: User Story 2 — Secrets Sourced from Vault (Priority: P2)
**Goal**: Confirm that no plaintext secret values appear in any committed manifest file. The implementation (VaultAuth + VaultStaticSecret × 2) was completed in Phase 2.
**Independent Test**: `git grep` across `k8s/` finds no plaintext credential values.
- [X] T013 [US2] Verify US2: run `git grep -rn "password\|secret_key\|access_key\|DATABASE_URL" k8s/` and confirm that only key names (in comments) and Vault path references appear — no actual values; also confirm that `k8s/vault/api-secret.yaml` and `k8s/vault/minio-secret.yaml` reference Vault paths under `spec.path` and that `spec.destination.create: true` is set so VSO creates the K8s Secrets
**Checkpoint**: US2 complete. Zero plaintext secrets in manifests; all secrets flow through Vault.
---
## Phase 5: User Story 3 — Schema Migrations Run Before API Starts (Priority: P3)
**Goal**: The API Deployment includes an Alembic init container. `api/Dockerfile.prod` is updated to include migration files.
**Independent Test**: `docker build -f api/Dockerfile.prod api/ -t reactbin-api-prod:test` succeeds and `docker run --rm reactbin-api-prod:test ls /app/alembic` shows migration files. `make validate-k8s` confirms the init container spec is accepted by the Kubernetes schema.
- [X] T014 [US3] Update `api/Dockerfile.prod`: in the **runtime stage** (the `FROM python:3.12-slim` stage), after the line `COPY --chown=appuser:appgroup app/ ./app/`, add two new lines: `COPY --chown=appuser:appgroup alembic/ ./alembic/` and `COPY --chown=appuser:appgroup alembic.ini .`; the builder stage is unchanged; verify with `docker build -f api/Dockerfile.prod api/ -t reactbin-api-prod:test && docker run --rm reactbin-api-prod:test ls /app/alembic /app/alembic.ini`
- [X] T015 [US3] Update `k8s/api/deployment.yaml`: add an `initContainers` block to the pod spec (before the `containers` block) containing one init container: `name: alembic-migrate`, `image: reactbin-api:latest` (same placeholder tag as the main container), `command: ["alembic", "upgrade", "head"]`, `workingDir: /app`, `envFrom: [{secretRef: {name: api-env}}]`, `securityContext: {runAsNonRoot: true, runAsUser: 1001}`; remove the `# initContainers block added in US3 (T015)` comment added in T010
- [X] T016 [US3] Verify US3: run `make validate-k8s` (or `yamllint -d relaxed k8s/`) and confirm the updated deployment.yaml with the init container passes validation; run `docker build -f api/Dockerfile.prod api/ -t reactbin-api-prod:test` and confirm it succeeds; run `docker run --rm reactbin-api-prod:test ls /app/alembic.ini` and confirm the file is present
**Checkpoint**: US3 complete. API Deployment includes Alembic init container; production image includes migration files.
---
## Phase 6: User Story 4 — MinIO In-Cluster with Persistent Storage (Priority: P4)
**Goal**: MinIO runs as a StatefulSet with a PVC, is accessible only within the cluster, and has the required bucket created by a Job.
**Independent Test**: `make validate-k8s` confirms all MinIO manifests pass schema validation. On a live cluster: MinIO pod reaches Running state, bucket exists, no external Ingress for MinIO.
- [X] T017 [P] [US4] Create `k8s/minio/service.yaml`: `Service`, `name: minio`, `namespace: reactbin`, `type: ClusterIP`, `selector: {app: minio}`, `ports: [{port: 9000, targetPort: 9000, name: s3}]`; add comment: `# No Ingress for MinIO — internal access only (FR-012)`
- [X] T018 [US4] Create `k8s/minio/statefulset.yaml`: `StatefulSet` (NOT Deployment — StatefulSet ensures stable PVC binding on pod recreation), `name: minio`, `namespace: reactbin`, `replicas: 1`, `selector.matchLabels: {app: minio}`, `serviceName: minio`; pod `securityContext: {runAsUser: 1000, runAsGroup: 1000, fsGroup: 1000}`; container `name: minio`, `image: minio/minio:latest`, `args: ["server", "/data", "--console-address", ":9001"]`, `ports: [{containerPort: 9000, name: s3}]`; `env: [{name: MINIO_ROOT_USER, valueFrom: {secretKeyRef: {name: minio-credentials, key: MINIO_ROOT_USER}}}, {name: MINIO_ROOT_PASSWORD, valueFrom: {secretKeyRef: {name: minio-credentials, key: MINIO_ROOT_PASSWORD}}}]`; `livenessProbe: {httpGet: {path: /minio/health/live, port: 9000}, initialDelaySeconds: 30, periodSeconds: 20}`; `readinessProbe: {httpGet: {path: /minio/health/ready, port: 9000}, initialDelaySeconds: 15, periodSeconds: 10}`; `volumeMounts: [{name: minio-data, mountPath: /data}]`; `volumeClaimTemplates: [{metadata: {name: minio-data}, spec: {accessModes: [ReadWriteOnce], resources: {requests: {storage: 10Gi}}}}]`; add comment: `# storageClassName omitted — uses cluster default; override if needed`
- [X] T019 [US4] Create `k8s/minio/init-job.yaml`: `Job`, `name: minio-init-bucket`, `namespace: reactbin`; `spec.template.spec.restartPolicy: OnFailure`; container `name: mc`, `image: minio/mc:latest`, `command: ["sh", "-c"]`, `args: ["mc alias set local http://minio.reactbin.svc.cluster.local:9000 $MINIO_ROOT_USER $MINIO_ROOT_PASSWORD && mc mb --ignore-existing local/reactbin"]`; `env: [{name: MINIO_ROOT_USER, valueFrom: {secretKeyRef: {name: minio-credentials, key: MINIO_ROOT_USER}}}, {name: MINIO_ROOT_PASSWORD, valueFrom: {secretKeyRef: {name: minio-credentials, key: MINIO_ROOT_PASSWORD}}}]`; `securityContext: {runAsNonRoot: false}` with comment `# minio/mc runs as root by default; FR-013 exception for this one-off init Job`; add comment: `# --ignore-existing makes this Job idempotent — safe to re-apply`
- [X] T020 [US4] Verify US4: run `make validate-k8s` (or `yamllint -d relaxed k8s/`) and confirm all three MinIO manifests (statefulset.yaml, service.yaml, init-job.yaml) pass validation; confirm no Ingress resource references MinIO
**Checkpoint**: All four user stories complete.
---
## Phase 7: Polish & Cross-Cutting Concerns
- [X] T021 [P] Run `yamllint -d relaxed k8s/` from the repository root and fix any YAML formatting violations across all 12 manifest files; confirm output shows no errors
- [X] T022 [P] Add `.yamllint.yml` at the repository root (if not already present) with `extends: relaxed` and `rules: {line-length: {max: 120}}` to keep line length reasonable for verbose K8s YAML
- [X] T023 Run `make build-prod` to confirm `api/Dockerfile.prod` still builds cleanly after the T014 addition; run `docker run --rm reactbin-api-prod:latest ls /app/alembic.ini /app/alembic/` and confirm both are present in the production image
---
## Dependencies & Execution Order
- T001 and T002 can run in parallel (directory creation vs Makefile edit)
- T003, T004, T005, T006 can run in parallel after T001 (different files, same phase)
- T007, T008, T009 can run in parallel after Phase 2 completes
- T010 after T007 (deployment references service name, easier to write with service done) — but they're different files so technically parallel; keep sequential for clarity
- T011 after T007 and T008 (Ingress references both service names)
- T012 after T007T011
- T013 after Phase 2 (Vault CRDs exist to inspect)
- T014 and T015 can run in parallel (different files: Dockerfile.prod vs deployment.yaml)
- T016 after T014 and T015
- T017, T018, T019 can run in parallel after Phase 2 completes
- T020 after T017T019
- T021, T022, T023 can run in parallel
### Execution Order Summary
```
Step 1: T001 ∥ T002 (setup)
Step 2: T003 ∥ T004 ∥ T005 ∥ T006 (foundational: namespace + Vault CRDs)
Step 3: T007 ∥ T008 ∥ T009 (US1: services + UI deployment)
Step 4: T010 (US1: API deployment)
Step 5: T011 (US1: Ingress)
Step 6: T012 (US1: validate)
Step 7: T013 (US2: verify no plaintext secrets)
Step 8: T014 ∥ T015 (US3: Dockerfile.prod + init container)
Step 9: T016 (US3: verify)
Step 10: T017 ∥ T018 ∥ T019 (US4: MinIO manifests)
Step 11: T020 (US4: validate MinIO)
Step 12: T021 ∥ T022 ∥ T023 (polish)
```
---
## Implementation Strategy
### MVP (US1 + US2 — application is reachable with Vault-backed secrets)
1. Phase 1 (Setup) + Phase 2 (Foundational)
2. Phase 3 (US1 — API, UI, Ingress)
3. Phase 4 (US2 — verify no plaintext secrets)
4. **STOP and VALIDATE**: apply to cluster, confirm `https://<domain>/` and `/api/v1/health` return 200
5. Deploy MVP
### Incremental Delivery
1. Setup + Foundational → Apply → namespace and Vault sync ready
2. Add US1 (API + UI + Ingress) → Deploy → application reachable at domain
3. Add US3 (Alembic init container) → Deploy → migrations run automatically on rollout
4. Add US4 (MinIO) → Deploy → persistent image storage in-cluster
5. Polish → clean YAML, confirmed builds